Computers are found in any work environment in order to significantly boost efficiency with the help of specialized applications. FinchTV is a simple application designed to help researchers easily view, analyze and manipulate DNA sequences. This program can open DNA chromatogram files and display the DNA sequence in a graph.
Easily load and analyze chromatogram files
The software has an easy to use interface, providing you with easy access to all its options. After opening the desired chromatogram file, you can view the corresponding DNA sequence in a graph. Moreover, the software enables you to modify the graph scale.
Identify and manage elements
One useful feature is that you can easily navigate through the sequences and bases, as you can use the search option to find the part or base you want. Furthermore, if you want to highlight a part of a sequence, you can convert the bases to upper or lowercase, so you can identify them more easily. Also, you have the possibility to replace the selected bases with N's or X's.
Multiple view types available
In order to analyze the sequences better, you can change the view mode and the base position numbers according to your preferences. Moreover, the program allows you to reverse the base order. Thus, you can view the entire DNA trace in a multi-pane view, with or without the base sequence (A, C, T or G) or the base position.
Gain access to thorough documentation
Moreover, you can modify the sequence by inserting new parts or deleting others. Additional information about a sequence part is available when accessing the nucleotide sequence: you can view the whole sequence, the total number of bases, as well as the number of lanes. After you modify the chromatogram file, you can save it in ABI or SCF format for later use or just print it.
To end with
In conclusion, although it does not feature as many options as other similar programs, FinchTV is able to offer you a graphic view of chromatogram files, while allowing you to easily analyze and edit DNA sequences. Even though it may not be the best out there, it manages to do a good job overall.
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FinchTV lets you view and analyze DNA sequences visually.
What FinchTV is and does
Intuitive interface for your DNA sequences analysis
View DNA sequences in a graphing user interface
View and sort DNA sequences
Modify and import sequences
Manage, view and analyze a large number of sequences
Print sequences as a bar graph to the screen or to a file
Automatically open and prepare sequencing traces
View and sort sequences according to specification
Split screen view of the DNA sequences
Extract the nucleotide sequence from the trace
Relate features and methods to the traces
Additional functions
Open, modify, sort and view additional information about sequences
Extract the nucleotide sequence from the trace
Assembling and alignment of sequences
Save, open and print your sequences
Manage, sort and visualize DNA bar graphs
Display, query and analyze more than one sequence at the same time
Display and compare sequences
Perform searches and alignments
Automatic sequence alignment
…
Designed to help scientists view, manipulate, sort and analyze DNA sequences, FinchTV may be the software of choice for anyone who needs to view, analyze, and sort a large number of DNA sequences. The user interface is easy to navigate and requires only a simple click of the mouse to run the software.
Chromatograms can be open in four different views: Lane (1 – 120), Sequence (A,C,T,G), Nucleotide (A,C,T,G), and any combination of Lane and Sequence. The sequence can be viewed in a Bar Graph, and is also viewable in a Matching Sequence Bar graph. There are multiple ways to view and manipulate the DNA sequence.
1) Sequences are sorted by query or by the location of the sequence in the chromatogram file.
2) Identifiers are identified.
3) Sequences can be duplicated from one line to another.
4) Multi-view is supported.
5) Sequences can be loaded and manipulated from the same Chromatogram file.
6) Sequences can be loaded and modified from another chromatogram file.
Additional features:
1) Search Sequences: The user interface allows users to quickly find a specific area, base or identifier within a single sequence.
2) Strand Bias: the user may visually highlight regions where the forward and reverse strands differ in base composition.
3) Sequence Extraction: FinchTV can read and extract the nucle
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FinchTV is a DNA sequence analyzing and viewing program designed to make the job of researchers more straightforward. It is designed to graphically show a user where DNA bases occur within a sequence, allowing the user to more easily identify sequences that match the expected template. FinchTV supports the ABI and the Staden database file formats, and also has the ability to view Chromatograms within a multi-pane view.
Features:
* Can open chromatograms of almost all formats including ABI, SCF, Clarity and Staden
* Gives you the ability to more easily identify sequences that match the expected template
* Graphically displays a user where DNA bases occur within a sequence
* Support the addition and removal of sequences from an ABI or Staden file.
* The software can modify the size of the graph
* Can open all types of files
* Multi-pane view mode gives users the ability to view the entire sequence in one graph
* Can view a sequence with or without the base sequence (A, C, T, or G), or the base position
* Can edit the sequence by inserting a new sequence, deleting an existing sequence, or modifying the sequence by replacing a base or bases
* Can save and print a sequence
* Does not require a powerful computer system
* Supports the ABI and Staden database file formats
Note: FinchTV gives users the ability to modify the size of the graph, which may not be available in all chromatogram viewers.
What’s New in 1.0.9.0:
The following are fixes that were added in the last update:
– Fixed a problem with the graph output that can cause an error message and/or an out of memory error.
– Fixed a problem with the change option for a folder.
– Fixed a problem that prevented the average window from updating when paused in a view that includes a graph.
– Fixed a problem with saving a sequence that had the size of the graph modifiable.
What’s New in 1.0.8.0:
* Fixed a problem with the change option for a folder.
What’s New in 1.0.7.0:
* Fixed a bug that would not allow a user to select two folders at once.
* Fixed a bug that caused an error message when attempting to open folders that already have a subfolder inside.
* Fixed a bug that would not allow a user to see all the options within a folder
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FinchTV is a genealogy research application that allows you to extract, clean and combine DNA sequences from DNA chromatogram files.
Once you have opened the DNA sequences file, you will be able to access all the information necessary to edit and clean these sequences.
You can search the sequences to find more information about them. For example, you can get access to their position, orientation, name, family, length, etc. You can also add more information to these sequences.
In addition, when editing the sequences, you can add new ones, modify the scale, swap parts or remove the already inserted ones.
Submitting the results
You can then submit your sequences, whether in a single sequence chromatogram file, or in a multi-sequence chromatogram file.
Once you submit your results, you will be able to download them in both ABI and SCF format.
Moreover, you can print them. You can also download FinchTV as a zip file for offline use.
Key Features:
– Extract DNA sequences from DNA chromatogram files
– View DNA sequences as ABI or SCF format
– Remove flanking sequences
– Align DNA sequences
– Reverse DNA sequences
– Retrieve individual DNA sequence
– Customize the position numbers of DNA sequences
– Convert DNA base pairs to the upper or lower case
– Move DNA sequences by inserting or deleting parts
– Add more information to DNA sequences
– Extract DNA sequences from DNA chromatogram filesLena Dunham’s Best Pop Theory:
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What’s New in the FinchTV?
FinchTV is a simple application designed to help researchers easily view, analyze and manipulate DNA sequences. In this app, you can open different chromatogram files: both the DNA sequence and the chromatogram file can be viewed in a graphical format. Here are a few features and options available in FinchTV:
* View the DNA sequence in a graphical format
* Load and analyze different chromatogram files
* View or edit the graph scale
* Identify and manage the elements in the DNA sequence
* Add your own data to the graph
* Reverse the base order
* Convert the selected bases to upper or lower case
* Create a new sequence
* Print chromatogram file
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System Requirements:
* Windows 7 or later
* Processor: Intel® Core™ i5 or Intel® Core™ i7
* Memory: 4GB RAM
* Hard disk: 18GB available space
* Display: 10.1″ or higher
* Graphics: ATI Radeon™ HD Graphics 4400/4200 or NVIDIA® GeForce® 920M or above
* Mac
* OS X 10.9.2 or later
* Processor: Intel® i5 or Intel® i7
*